Welcome to CRAFT’s documentation!

Contents:

• CRAFT (README)
  • Quick start guide
  • The CRAFT workflow
  • Input file formats
  • Output
  • Test data
  • Did you find an issue / missing feature?
  • References

CRAFT Pipeline Documentation:

• annotate
• abf
• config
• finemap
• getSNPs
• log
• main
• paintor
• read

Visualisation Documentation:

• Visualisation (README)
  • Manhattan Plots
  • LD Block Plots
  • Locus Plots
  • Test data / figures
• figure_generator
• visualise

Indices and tables

• Index
• Module Index
• Search Page