Index

A

abf_cred() (in module craft.read)

annotation_annoVar() (in module craft.annotate) annovar() (in module craft.read)

C

calc_abf() (in module craft.abf) calc_postprob() (in module craft.abf) craft.abf (module) craft.annotate (module) craft.config (module) craft.finemap (module) craft.getSNPs (module)

craft.log (module) craft.main (module) craft.paintor (module) craft.read (module) craft.visualise (module) cred_annotated() (in module craft.read) csv() (in module craft.read)

F

finemap() (in module craft.finemap) finemap_annotation_annoVar() (in module craft.annotate)

finemap_cred() (in module craft.read) fit_text() (in module craft.visualise)

G

get_index_snps_bp() (in module craft.getSNPs)

get_index_snps_cm() (in module craft.getSNPs) get_locus_snps() (in module craft.getSNPs)

I

index() (in module craft.read)

interpolate_bp() (in module craft.getSNPs) interpolate_cm() (in module craft.getSNPs)

L

ld() (in module craft.read)

ld_block() (in module craft.visualise) locus() (in module craft.visualise)

M

manhattan() (in module craft.visualise)

maps() (in module craft.read)

P

paintor() (in module craft.paintor) parse_args() (in module craft.main)

plink() (in module craft.read) prepare_df_annoVar() (in module craft.annotate)

S

snp() (in module craft.read)

snptest() (in module craft.read)

V

variant_file() (in module craft.read)